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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcttctctttgtctgcttttcctccttcatcagcatcatcaaaatccacgtaatttccttgttaacatcttcttttgatctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA

Basic information

species Glycine max
transcript GLYMA01G37340.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37340.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g43400.4 (Oryza sativa), 3'ss of exon 2
gtgagtttcttctctttgtctgcttttcctccttcatcagcatcatcaaaatccacgtaatttccttgttaacatcttctt-ttgatctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA
|| ||   |       || |        |  |||| |  ||||  ||     |   |   |||    | | |  |    |   | |  ||| | | |||  |     |   |||||||||| || || ||||| |||||||||||||| ||||| ||||| ||||  || ||||| || || |  ||    ||||| | | ||||||| |||||
gtaagcaccgaagaaatgacg-------caacttcgtt-gcattgtcg----ctttgagttttgtgaggtgatgtggggtaactaacatctgcacttgggttggttcttggcagCAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGACCGGGATAACCGAGTATAGTGTTCTCGACATCTATGACTACATCGAAAA

upper sequence: GLYMA01G37340.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtttcttctctttgtctgcttttcctccttcatcagcatcatcaaaatccacgtaatttccttgttaacatcttcttttgatctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA
                                 | |      || ||  | | |   | | ||  || |   |     ||  || |   | |  ||     ||  ||  ||||| ||  | ||||||||||| |||||||||||||| ||||||||||| |||| ||| || || || ||  |  || | || || | | | ||||| || ||
--------------------------------gtaaggcatgtc-tcctactgctttttagttttttatcctctgtggctcatgtttgatacaaatttcaactgttt--tcagCTAGTGTCTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGATTGGTATTACGGATTATGCCTTGGCTGATATATATGATTACATTGAGAA

upper sequence: GLYMA01G37340.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G66310.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtttcttctctttgtctgcttttcctccttcatcagcatcatcaaaatccacgtaatttc-cttgttaacatcttcttttg-atctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA
                                ||  ||| | |   |    ||  ||| | | | |||  |  |  ||| | ||| || | |        ||  |  ||  ||||| ||  | || |||||||| |||||||||||||| ||||| ||||| ||||| || || ||||| | | |  ||   || || | |  |||||| || ||
-------------------------------gtttgtcatccttccc----tctgcgttactactctttctctccccttgtcttgcatatataattcaaatgcattgttt-tcagCTAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAA

upper sequence: GLYMA01G37340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttcttctctttgtctgcttttcctccttcatcagcatcatcaaaatccacgtaatttccttgttaacatcttcttttgatctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA
|||||| |   |  ||| | |  |||   |||||   | || || |  || | ||| |     |||  || | |          |   |||  ||   |     |||   ||||||| |||||||| |||||||||||||||||||| ||||||| ||| ||||| || || ||||| || ||  || |||| || | | || | ||||| | 
gtgagtataaacatttttttt--tttgtgtccttttcctgcttc-ttgaacttcacttgg--acctcattgata----------aatactcaacaaaat-----attttccagCAAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttccttgttaacatcttcttttgatctctccccatggtgtctaattgatcagCAAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAA
                                            taattgat  TA-rich tract