Sequence
atgc intronic sequence ATGC exonic sequence...gtggtagcatggtgtgaacattcttttcaattctcatgtacaatgttcatttctacctcgatacgtacttgtcttattgactgatgttcctttggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
Basic information
species | Glycine max |
transcript | GLYMA01G37180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G37180.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G66250.1 (Arabidopsis thaliana), 3'ss of exon 2
gtggtagcatggtgtgaacattcttttcaa---ttctcatgtacaatgttcatttctacctcgatacgtacttgtcttattgactgatgttcctt-tggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
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--ggt-gtttgataacgacttgtttcaaaaaacttcatacgagtcatatttcctttccttttgttat-tgtaagtttatgggaatgtcaatgatgatgaaacagGCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCAGAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTG
upper sequence: GLYMA01G37180.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G66250.4 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------------------------------gtggtagcatggtgtgaacattcttttcaa---ttctcatgtacaatgttcatttctacctcgatacgtacttgtcttattgactgatgttcctt-tggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
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gtcacccttgggatgagagatgagtgggattttcatcaggtttacactattcttaggtgtttgataacgacttgtttcaaaaaacttcatacgagtcatatttcctttccttttgttat-tgtaagtttatgggaatgtcaatgatgatgaaacagGCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCAGAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTG
upper sequence: GLYMA01G37180.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03250.t01 (Vitis vinifera), 3'ss of exon 2
gtggtagcatggtgtgaacattcttttc------aattctcatgtacaatgttcatttctac----ctcgatacgtacttgtcttattgactgatgttcctttggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
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----------tttgtaaacctctttctctgtggtggtttctatttttagccttcctctttgcaagctactttcctgactgattttattatttaattttgtttggaagcagGCTAGTTGCAAAGACAACACAGCTGGAGGGTGAAAAAAAGCAGAAAGAGACTGAAGTCCAGAAACTTATGGAAGAAAATGTGAGGTTGAGTGCTCTTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151405803|gb|EV275618.1|EV275618EST: TTGCTTTCTTCAGAGAAGCAATTTCAAACTATTGAGAGGCTGTTTGAAAA GCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGC
genomic: TTGCTTTCTTCAGAGAAGCAATTTCAAACTATTGAGAGGCTGTTTGAAAAgtgagtatac ... tttggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatttctacctcgatacgtacttgtcttattgactgatgttcctttggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
tgttccttt CT-rich tract
tcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtagcatggtgtgaacattcttttcaattctcatgtacaatgttcatttctacctcgatacgtacttgtcttattgactgatgttcctttggagcagGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTCAGGTTGAATGCACTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - gcatggt
- - - - - - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg