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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttcctctctcagatccatcgttaccttgttttccgttggatcctctaactgtttctgtattcgcgattgttaatttgcgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA

Basic information

species Glycine max
transcript GLYMA01G36870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 2
-----------------gtctgttcctctctcagatccatcgttaccttgttt---tccgttggatcctctaactgtttctgtattcgcgattgttaatttg-----------cgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA
                  || | |||||  |    || ||||  |  |  |||   |   ||  ||  | ||  | ||| |   ||   ||||   ||| ||           |    || ||    |   |  | | ||  ||||||||| || |||||| | || ||||||||||||||||||||| |||||||| |  | ||||||||||| ||||| ||||| |||||||| || || ||
gtaatttctcctcaccgatccgatcctcctttgtgtcgatcgagatgtaatttaatttgatttaattatttatttatttttac-tttaagatttgaaatctgaagaataagggcaagattttccttttctgtatggttttgaagACATGCGAGCATTTGATGAATTGAGGAAGCTGGAGATGTTCTTCAAGGAAGAGGCAAGGCGCGGTTGCTCTATTATCGATCTCTATGAACTTGTGCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtattcgcgattgttaatttgcgtctttctctcgctgaattcgttgtttcagACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCA
              tgttaat  putative branch site (score: 3)
                                              ttgtttc  putative PPT
            attgttaattt  TA-rich tract