1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgcttttcttctattacctagtgttttaaacattaaagtgtggtgtgtgctttttttaaggacaatgagttctaatgtgttgtttttgtctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGT
species | Glycine max |
transcript | GLYMA01G36760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|298198959|gb|HO042322.1|HO042322
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttaattca ... tctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|298197843|gb|HO039382.1|HO039382
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttaattca ... tctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGEST: gi|15663346|gb|BI700717.1|BI700717
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttaattca ... tctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
EST: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAG TTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
genomic: AGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGgtttaattca ... tctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTG
tgtgtgctttttttaaggacaatgagttctaatgtgttgtttttgtctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGT
ttctaat putative branch site (score: 2)
tttttgtct putative PPT
tttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgcttttcttctattacctagtgttttaaacattaaagtgtggtgtgtgctttttttaaggacaatgagttctaatgtgttgtttttgtctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
aatgctt
- - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt