1 5' 3' | 2 5' 3' | 3 5' 3' |
...tataggtcacttgtgattgcttaaacttgttgaacacaagtctctatccttcagattgttttatactagaataacaaactctgcattctgttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
species | Glycine max |
transcript | GLYMA01G36260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGEST: gi|254344045|gb|GR850955.1|GR850955
genomic: ACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
EST: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGEST: gi|14008938|gb|BG725542.1|BG725542
genomic: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
EST: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGEST: gi|8827190|gb|BE210920.1|BE210920
genomic: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
EST: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGEST: gi|10234462|gb|BE803350.1|BE803350
genomic: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
EST: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGEST: gi|254344274|gb|GR851077.1|GR851077
genomic: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
EST: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAG GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
genomic: GAGATATGTTGTTTACACCCAAGGGCGGACAAGGTTTTAGTGAGGATGAGgtatgataat ... ttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
atccttcagattgttttatactagaataacaaactctgcattctgttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
ttctgtt CT-rich tract
ttttatactagaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataggtcacttgtgattgcttaaacttgttgaacacaagtctctatccttcagattgttttatactagaataacaaactctgcattctgttgattccagGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -tgattgc
- - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - aacacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgca