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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagaagcgttaattttacaggtcttaactcttaatcaattctttgttcttattcttaatcttacaataaggttcaattccttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCGTTCTCTTTTTCTG

Basic information

species Glycine max
transcript GLYMA01G36200.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36200.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G17520.1 (Arabidopsis thaliana), 3'ss of exon 5
-gtgagtagaagcgttaattttacaggtcttaactcttaatcaattctttgttcttattcttaatct-tacaataaggttcaattccttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCGTTCTCTTTTTCTG
 |||  |  | ||  |   |   |   | || | | |   | |  | | ||   | | | | || |   |   | |   |   | | ||||   | |  ||| | ||| ||||| || ||||||||||| ||||| ||| | ||||| |||||||| || || || ||| | |||||||||||||| ||  |||||| |  
agtgtctgaacgcaatgtatgatcgtttgttgaatatgtgttatgtttatgaaatgagtttcaacccacatttttaaagtatctgctttaaaaac-tacagGTTCTGGCAGTTCGGGCTGGCAAGCACCAGAGCAGCTTCTACAAGGTCGTCAAACTCGTGCAGTCGATATGTTTAGTTTAGGTTGTGTCATCTTTTACAC

upper sequence: GLYMA01G36200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
--gtgagtagaagcgttaattttacaggtcttaactcttaatcaattctttgttcttattcttaatct-tacaataaggt-tcaattccttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCGTTCTCTTTTTCTG
   | | | |   | || |      ||   || ||   |||   ||   | ||| |||||  || |   | || | |  | |  ||  || ||||   || ||| | ||| ||||| || ||||| ||||| ||||| ||| |||| ||||| ||||||||||| || ||||| ||||||||||||||| | ||||||| |||
atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatt---tgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207689590|gb|GD671983.1|GD671983
EST:     TAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTG                         GCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTC
genomic: TAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTGgtgagtagaa ... ttgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTC
EST: gi|192323605|gb|FK017126.1|FK017126
EST:     TAGTAAACGCCTTCTTAAGGATATGTCTTCTTTGGGTCACACTGTTACTG                         GCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTC
genomic: TAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTGgtgagtagaa ... ttgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgttcttattcttaatcttacaataaggttcaattccttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCGTTCTCTTTTTCTG
         ttattcttaatcttac  TA-rich tract