1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagaattttaacaagtcaaaggctcttttcaagctttatttgcaataaataaccatttcatttgtcatattttagcagtactagtatattttattcattgatttgtttttttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTTACATTGTCAGAATATGTATTCCCGAAAAGCTGGCAGACAATATGTTACC
species | Glycine max |
transcript | GLYMA01G36170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG AGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCTGAGTTEST: gi|19268818|gb|BM885074.1|BM885074
genomic: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTGgtaagaattt ... tttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTT
EST: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG AGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTTEST: gi|192334105|gb|FK026262.1|FK026262
genomic: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTGgtaagaattt ... tttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTT
EST: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG AGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTT
genomic: ACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTGgtaagaattt ... tttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTT
tcatattttagcagtactagtatattttattcattgatttgtttttttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTTACATTGTCAGAATATGTATTCCCGAAAAGCTGGCAGACAATATGTTACC
cattgat putative branch site (score: 4)
tttgtttttttcttgc CT-rich tract
tactagtatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattttaacaagtcaaaggctcttttcaagctttatttgcaataaataaccatttcatttgtcatattttagcagtactagtatattttattcattgatttgtttttttcttgcagAGTTGATGATTTTAGGTTTCATTTCACTGCTTTTGACTTTCGGGCAGAGTTACATTGTCAGAATATGTATTCCCGAAAAGCTGGCAGACAATATGTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG