Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccattaacacttaatgaagtcttttcctcttttttcttatttttcatttgtcttttatacttacatatcttattgacagcagtgtttcatttatatgacagCTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT

Basic information

species Glycine max
transcript GLYMA01G36030.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207794189|gb|GD767607.1|GD767607
EST:     TGGACAACGTAAATTTGTTGGGAAAAGATGCAAGGATACAAGTGAATCAT                         CTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGAC
genomic: TGGACAACGTAAATTTGTTGGGAAAAGATGCAAGGATACAAGTGAATCATgtaactccat ... tatatgacagCTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGAC
EST: gi|151396933|gb|EV266806.1|EV266806
EST:     TGGACAACGTAAATTTGTTGGGAAAAGATGCAAGGATACAAGTGAATCAT                         CTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGAC
genomic: TGGACAACGTAAATTTGTTGGGAAAAGATGCAAGGATACAAGTGAATCATgtaactccat ... tatatgacagCTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcttttatacttacatatcttattgacagcagtgtttcatttatatgacagCTTGTGCATTATGTGTTCAATCCTGCACTGGTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT
                                      tttcattt  CT-rich tract
      ttttatacttacatat  TA-rich tract