1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattgttcatacttcatacatgcatatatcattcttcaaagttgtttggacccttagccttgccttacactttcttctttttaatttttggacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCA
species | Glycine max |
transcript | GLYMA01G35660.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGEST: gi|12489669|gb|BG043190.1|BG043190
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAATAAAGTGGAGAAGATAAGEST: gi|5820326|gb|AI988532.1|AI988532
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
ttggacccttagccttgccttacactttcttctttttaatttttggacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCA
ttttaat putative branch site (score: 3)
actttcttctttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgttcatacttcatacatgcatatatcattcttcaaagttgtttggacccttagccttgccttacactttcttctttttaatttttggacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGGGTCTAAATTGGGAAGATGCAAAAAAGATGCCAATAACTTCAAGGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - -ttgtttg