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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG

Basic information

species Glycine max
transcript GLYMA01G35650.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 3
gtttggttaaatactgaaatgtgttttgag-tttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
       |  | ||  |  | |  | ||||   ||  ||||   | |   |||| |||    | |  | ||  |   | |     ||     || ||||||  ||||||||| || |||||||| |||||||||||||||||||| ||||| ||||| || ||  ||| |||| |||| |||||| | ||||| ||||| || ||||
------gtgcacacaaagttcttatgtgagacataagtgattt-tcatgatgtt-gtgtccataggaaattaacctgctt---cattaactctt-ttatgtttgcagAGTGATAGCCATAATCTTAAGTACATGGGCATTGATGCTCTTGGCCGGTTAATTAAAATAAATCCAGATATCGCAGAAGAGCACCAGCTGGCTGTTATTG

upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 2
gtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgg---gcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG-----------
                   | ||       | |  || ||  |  | ||   | |    ||  ||| ||| |     |  ||  ||  | ||  ||   | |   ||||||||| ||||||||||| |||||||||||||||||||| |||||  |||| |||||  ||| |||| ||||||||||| | ||||| ||||| |||||||           
------------------gtttgcacatgatctttattatgggaaaaataaatggcatgttgtgttctttggaggctaaccaacttaatcatccttgcattgattgcagagtgatagtcataatcttaagtacatgggcattgatgctcttggcagGTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTGATTGCTTAGAG

upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G031352_T02 (Zea mays), 3'ss of exon 3
gtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgg---gcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
                   | ||       | |  || ||  |  | ||   | |    ||  ||| ||| |     |  ||  ||  | ||  ||   | |   ||||||||| ||||||||||| |||||||||||||||||||| |||||  |||| |||||  ||| |||| ||||||||||| | ||||| ||||| |||||||
------------------gtttgcacatgatctttattatgggaaaaataaatggcatgttgtgttctttggaggctaaccaacttaatcatccttgcattgattgcagAGTGATAGTCATAATCTTAAGTACATGGGCATTGATGCTCTTGGCAGGTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTG

upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 3
gtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
    | ||    | |||  | | || ||     | |||  | |     || || |  |  |     | ||      ||| | | | ||| |||          |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||| | |||||  |||  ||| ||||||||||| | ||||| || || |||||||
----gtttgcgca-tgatctttattatggaa--aaatggcatgctgtcttttttggaggctaaccaacttaat---catccctttcgttgattt---------cagAGTGATAGTCATAATCTTAAGTACATGGGTATTGATGCTCTTGGCCGGCTAATAAAAATAAACCCAGATATTGCAGAAGAGCACCAGCTAGCTGTCATTG

upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
              |    ||| ||    || |  |||  |  |    ||||||      ||     | ||  | | || |  |  |  || | ||      ||||||||| ||||| ||||||||||||||||| |||||||  |||||||| ||||||||  |||| ||| | ||||| || || |||||||| || || || |
-------------gtttgttgtcttcctggtatgtatg-catatactcttgttaac---cttacgattgttatttaaatcccgg--gcaaactattt-----gcagAGTGATAGTCACAATCTGAAGTACATGGGTATTGATGGTCTTGGTCGATTGATAAAAATAAGCCCAGACATTGCTGAGCAGCACCAACTTGCTGTGATAG

upper sequence: GLYMA01G35650.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 3
gtttggttaaatac----tgaaatgtgttttgagtttacatgatacgtga----cattgt--tagtggatttggtt-----attttgct-cacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
|||||  |  | ||    | |  || ||        |||    | | |||    |||  |  ||| |  |||||||     ||||||   | ||||  | |   | ||| |  | | |||||||||| ||||||||||| ||||| |||||||||||||||||| || |  |||||||| |||||||| | ||||| |||||||||||| |||| |||||||
gtttgtctccacacctttttagttgcgtcccacaactactaatttcctgattatcatcatcttagagcttttggttgccatattttgtaactcatgtttttctgttattatccttttggcagAGTGATAGTCATAATCTAAAGTATATGGGCATTGATGCCCTTAGTAGACTGATAAAGATAAGTCCAGAAATTGCTGAACAACACCAATTGGCTGTCATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193550971|gb|FK507238.1|FK507238
EST:     ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG                         AGTGACAGTCATAATCTGAAGTACATGGGCATTGAT
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGAT
EST: gi|193609589|gb|FK564859.1|FK564859
EST:     ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG                         AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
EST: gi|208277887|gb|GE074894.1|GE074894
EST:     ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG                         AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
EST: gi|207833030|gb|GD801329.1|GD801329
EST:     ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG                         AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTAAGTCCACATATTGCAGAACAACACCAACTGGCCGTCATTG
                                 ttgttaattgttat  TA-rich tract