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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggaatttttgctgtgtcctttcatatattaatcatcttcttaatctcatgcttattattttcaatgatgtttatactatttgggaaattgaaattcaaaatattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG

Basic information

species Glycine max
transcript GLYMA01G35480.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35480.3 (Glycine max), 3'ss of exon 2
lower sequence: AT4G19420.1 (Arabidopsis thaliana), 3'ss of exon 2
gttaggaatttttgctgtgtcctttcatatattaatcatcttcttaatctcatgcttattattttcaatgatgtttatactatttgggaaattgaaattcaaaatattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG
     || || ||  |   ||  || ||||||| ||    || ||  ||  ||   || ||| ||      | ||| || | ||      ||  |  |        ||||||||||||||| ||||| |||||||||||||| ||||| ||||  || | |||| | || || || | ||||||| |     |||||
---gtgagttattaat---tctgtttatatatttatt-cattattgttcctata--tagtatatttttgtgtttttttattcttc-----atctatgtcttttg-gttttgcagTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAG

upper sequence: GLYMA01G35480.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 2
gttaggaatttttgctgtgtcctttcatatattaatcatcttcttaatctcatgcttattattttcaatgatgtttatactatttgggaaattgaaattcaaaatattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG
  |   ||   ||| |      ||     | ||   ||  || ||    ||||  |   |  ||| | ||||  ||||  | | ||  || | || ||||    |||| ||||||||| |||||||| || ||||| ||||||||  | ||||||||||||||  |||||||||||||||||||||||    |||||
-gtgaaaaaccttgttaga--attcgggttttttcccaaatttttg--ttcataatctgttgtttgattgattcttatg-tgtgtgaaaattcgacattct---tattatgcagTTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311525|gb|BG405176.1|BG405176
EST:     TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTG                         TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
genomic: TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTGgttaggaatt ... tattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
EST: gi|151394706|gb|EV264577.1|EV264577
EST:     GTTCAGAACGCGGTAGCTAAAGGAGCTG                         TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
genomic: GTTCAGAACGCGGTAGCTAAAGGAGCTGgttaggaatt ... tattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
EST: gi|13311486|gb|BG405137.1|BG405137
EST:     TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTG                         TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
genomic: TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTGgttaggaatt ... tattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
EST: gi|213605459|gb|DB966952.1|DB966952
EST:     TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTG                         TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT
genomic: TTCTTATGTGCCAATCACTATTGTTCAGAACGCGGTAGCTAAAGGAGCTGgttaggaatt ... tattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcaatgatgtttatactatttgggaaattgaaattcaaaatattttgcagTTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG
                             aaattgaaattcaaaa  TA-rich tract