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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgtcgcacacagaagtttctatttttgtagtattgccatgttgagattaagccagcgtaagttttatgttatttttggctttacaccagGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG

Basic information

species Glycine max
transcript GLYMA01G34270.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34270.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ09911 (Selaginella moellendorffii), 3'ss of exon 2
gtgagttttgtcgcacacagaagtttctatttttgtagtattgccatgttgagattaagccagcgtaagttttatgttatttttggctttacac-cagGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG
                                             | ||   |   | ||      || | ||  | ||  ||     |  ||  ||||||| || || ||  | |||||||||||||| ||||| ||||| ||||| |||||||| ||||  || |||||    || || |||||| ||
-------------------------------------------gtaagtcatgcccatgcgcctcaaactctttcgctaacttgccagtgccatgcagGTGGACGATGCGTCCTCAAGATGGACCACCACTGTGTCTGGGTTGTCAATTGTGTTGGTGCTCGCAACTACAAGGCGTTTCTACTTTTCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393214|gb|EV263089.1|EV263089
EST:     TCGGAAATGCAATCAACTCAAGCCGCCTCGATGCCATCATTGTTCAGTTT                         GTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACT
genomic: TCGGAAATGCAATCAACTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTgtgagttttg ... tttacaccagGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACT
EST: gi|13240177|gb|BG359486.1|BG359486
EST:     CGATGCCATCATTGTTCAGTTT                         GTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACT
genomic: CGATGCCATCATTGTTCAGTTTgtgagttttg ... tttacaccagGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatgttgagattaagccagcgtaagttttatgttatttttggctttacaccagGTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG
                       taagttttatgttatt  TA-rich tract