1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacattactattttatgttttcataacatgcatctctggaactgtaataccgggaccatgttcatttctaattgcatttgtccttgttcattctgatcagGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
species | Glycine max |
transcript | GLYMA01G23210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAATCTTGTAAAGGATTTTGACAAG GTTGAGATGATTCTGCAAGCGCTGGAATATGGAACAGEST: gi|120531682|gb|EH259815.1|EH259815
genomic: CAAATCTTGTAAAGGATTTTGACAAGgtatctgttt ... ttctgatcagGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
EST: ATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG GTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
genomic: ATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAGgtatctgttt ... ttctgatcagGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
aataccgggaccatgttcatttctaattgcatttgtccttgttcattctgatcagGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
ttctaat putative branch site (score: 2)
tccttgttcattct putative PPT
atttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacattactattttatgttttcataacatgcatctctggaactgtaataccgggaccatgttcatttctaattgcatttgtccttgttcattctgatcagGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - -ctctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtccttg