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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttgtttagatgttactgtgtggaaatgttgaatgatttatgtccatattatacaagaatcagatcagctgagacatctgtcttatttttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAG

Basic information

species Glycine max
transcript GLYMA01G22680.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708362|gb|BW683952.1|BW683952
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
EST: gi|18040495|gb|BM308789.1|BM308789
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattatacaagaatcagatcagctgagacatctgtcttatttttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAG
                                 tctgtcttattttttt  CT-rich tract
                                   tgtcttattttttt  TA-rich tract