1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaaccccaatttttttttaaaaaaacaaacatttattttattttgttttttaagcagaaaaattaaaagatgcttttggttttatttagGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGGTGATGCAAAGG
species | Glycine max |
transcript | GLYMA01G21900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAG GACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTEST: gi|192318502|gb|FK006174.1|FK006174
genomic: GGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAGgtaaaacccc ... ttttatttagGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGT
EST: GCTCAGATCCGTTCAGTTTGTGGAATCCCAATCCCCCTCCTACCAAAGAG GACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGT
genomic: GCTCAGATCCGTTCAG-TTGTGGAATCCCAATCCCCCTCCTACCAAAGAGgtaaaacccc ... ttttatttagGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGT
attttattttgttttttaagcagaaaaattaaaagatgcttttggttttatttagGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGGTGATGCAAAGG
ttttattt CT-rich tract
attttgttttttaagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaccccaatttttttttaaaaaaacaaacatttattttattttgttttttaagcagaaaaattaaaagatgcttttggttttatttagGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGGTGATGCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG