Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacatatacctccctttggaccattcttctttcttgtgtggttattgatgtttttttatacatgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTC

Basic information

species Glycine max
transcript GLYMA01G07470.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G07470.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0025g01220.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------------gtaagttacatatacctccctttggaccattcttctttcttgtgtggttat---tgatgtttttttatacatgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTC
                                                      |   ||  | | |    ||     | |   ||   ||| | | || || |   | || ||||| |  ||   || |||||||||||||||| ||||||||||| ||||| ||| | ||||| | ||| |||||| | || || ||||||||||||||   ||  ||| | |||||| | 
gtaaagccccattaatctccccccttcctctgttccattctgaaaattttctctttttttttagaaaaggacccgctaatctccctcgcttcctctctgcttctctctaatttttttctcaactcttttacagGAAAGAGAAGGACCCATTGAAACCGAAGCATCCTGTATCAGCATTTTTTTTGTTCTCAAAGGAAAGGCGAGCAGCTCTGCTTGGAGAGGATAAGAATGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207801647|gb|GD775159.1|GD775159
EST:     AGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193323119|gb|FK292113.1|FK292113
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAA
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAA
EST: gi|193405964|gb|FK375161.1|FK375161
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193601398|gb|FK549401.1|FK549401
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207685198|gb|GD669090.1|GD669090
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAAC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAAC
EST: gi|193692142|gb|FK630621.1|FK630621
EST:     TGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: TGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208141096|gb|GD938196.1|GD938196
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAA-GCACCC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCC
EST: gi|193500859|gb|FK464978.1|FK464978
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207746533|gb|GD720204.1|GD720204
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207738350|gb|GD716114.1|GD716114
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193314956|gb|FK282128.1|FK282128
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207682804|gb|GD666421.1|GD666421
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193406975|gb|FK374772.1|FK374772
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193653881|gb|FK598325.1|FK598325
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAG
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAG
EST: gi|193422490|gb|FK387583.1|FK387583
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193649413|gb|FK595024.1|FK595024
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193693539|gb|FK633317.1|FK633317
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193453550|gb|FK419914.1|FK419914
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193616912|gb|FK570616.1|FK570616
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193594689|gb|FK547626.1|FK547626
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208034466|gb|GD833816.1|GD833816
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208124061|gb|GD921953.1|GD921953
EST:     AGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193596181|gb|FK551840.1|FK551840
EST:     AACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207808663|gb|GD779474.1|GD779474
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193699567|gb|FK639882.1|FK639882
EST:     CAATTCAAACAAGAGGCNGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207693375|gb|GD674978.1|GD674978
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193305647|gb|FK271004.1|FK271004
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCC
EST: gi|208039752|gb|GD838480.1|GD838480
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208259327|gb|GE053841.1|GE053841
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193637612|gb|FK584957.1|FK584957
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGC
EST: gi|207836532|gb|GD805745.1|GD805745
EST:     AATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208316984|gb|GE112797.1|GE112797
EST:     AGGCAGAAAAAGATTGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AGGCAGAAAAAGA-TGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208054704|gb|GD850635.1|GD850635
EST:     CAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193630844|gb|FK585055.1|FK585055
EST:     ATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: ATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193303576|gb|FK271636.1|FK271636
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208268503|gb|GE072060.1|GE072060
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207727193|gb|GD704349.1|GD704349
EST:     CAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193378273|gb|FK343690.1|FK343690
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193587881|gb|FK539150.1|FK539150
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208308317|gb|GE109661.1|GE109661
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208027946|gb|GD823138.1|GD823138
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193677663|gb|FK616573.1|FK616573
EST:     AATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208050859|gb|GD845032.1|GD845032
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGC
EST: gi|193632970|gb|FK580118.1|FK580118
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207802265|gb|GD773047.1|GD773047
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAGGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208031366|gb|GD827094.1|GD827094
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207688410|gb|GD672203.1|GD672203
EST:     TGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: TGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|8282859|gb|BE020420.1|BE020420
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208105387|gb|GD902802.1|GD902802
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAGAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207757087|gb|GD730045.1|GD730045
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193331485|gb|FK293309.1|FK293309
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCA
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCA
EST: gi|193360683|gb|FK325999.1|FK325999
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207710412|gb|GD692412.1|GD692412
EST:     CAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208142364|gb|GD935362.1|GD935362
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208137247|gb|GD937155.1|GD937155
EST:     ATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: ATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193458248|gb|FK422511.1|FK422511
EST:     AAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|208034076|gb|GD827812.1|GD827812
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193642690|gb|FK594116.1|FK594116
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207806628|gb|GD776515.1|GD776515
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207751485|gb|GD724864.1|GD724864
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACC
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACC
EST: gi|208201216|gb|GD996615.1|GD996615
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATTCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193527127|gb|FK483365.1|FK483365
EST:     CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGCAAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGATGGAAAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|193307913|gb|FK271991.1|FK271991
EST:     AAGAAGAAC-A                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT
EST: gi|207789717|gb|GD761779.1|GD761779
EST:     AAGAAGAACAA                         GAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTATTTCTT
genomic: AAGAAGAACAAgtaagttaca ... atgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaccattcttctttcttgtgtggttattgatgtttttttatacatgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTC
                          tattgat  putative branch site (score: 3)
                         ttattgatgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttacatatacctccctttggaccattcttctttcttgtgtggttattgatgtttttttatacatgttcacagGAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCCTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC