Sequence
atgc intronic sequence ATGC exonic sequence...aattactctatagtttgctatttatttatttatttttattatttgaccttgccctgtacttggatatatgtcatcagctagatgactgggtcttgtgtagGATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTACCCAATAGCCCAAATCAACCTTACACCAGCAAACAATAACAGTGAACAA
Basic information
species | Glycine max |
transcript | GLYMA01G06150.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254343870|gb|GR857626.1|GR857626EST: GATTAATTGGATCAAGAAGACAAGCCAATAGACAAGTTGGATCCATGAGG GATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTA
genomic: GATTAATTGGATCAAGAAGACAAGCCAATAGACAAGTTGGATCCATGAGGgtaagccttt ... tcttgtgtagGATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTA
EST:
gi|23732430|gb|BU764373.1|BU764373EST: GATTAATTGGATCAAGAAGACAAGCCAATAGACAAGTTGGATCCATGAGG GATTTACAAGAA
genomic: GATTAATTGGATCAAGAAGACAAGCCAATAGACAAGTTGGATCCATGAGGgtaagccttt ... tcttgtgtagGATTTACAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accttgccctgtacttggatatatgtcatcagctagatgactgggtcttgtgtagGATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTACCCAATAGCCCAAATCAACCTTACACCAGCAAACAATAACAGTGAACAA
atttgac putative branch site (score: 4)
atatatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattactctatagtttgctatttatttatttatttttattatttgaccttgccctgtacttggatatatgtcatcagctagatgactgggtcttgtgtagGATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTACCCAATAGCCCAAATCAACCTTACACCAGCAAACAATAACAGTGAACAA
- - - - - - - -tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg