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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG

Basic information

species Glycine max
transcript GLYMA01G05740.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 3'ss of exon 2
ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaat-tgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
  | |   |||  | ||| |  | |  || ||||  ||||       |   | |    | || | |  || |   | ||     || |  |   | | |||||||| |||||||||||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||||||  | ||||||| ||| |
-gataccgtttggttcttcatattaccgatattacttttctctatgctatttcactggatatttgtacttgaggatttatacagtgttctattttctccagATTCCCCACTTGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 2
-----ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
        ||  |   ||| ||||      || |  ||| | ||| | ||||   ||   | ||    |  || | | |   |   || ||||  ||   |||||||||||||| |||| ||||| |||||||||||||| || ||  | || || || ||||| || |||||| | || ||||| ||  | ||||| | ||| |
aattggttgaaataagttttctttgaacc-ggtatcttaagcttcat-tgttaacattgcaatatccttggttcttacaaagttgcttgtgctaaac---tgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATCGCAGGACCGTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
-----ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
       ||    | ||  | ||    ||  | |   || ||||      |||  |||| |||  |   ||  |   || | |    |||||||  |||||||||||||||||| |||| ||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||| ||| | ||||| |  || |
tcagattaggcagtcttaagtttgcactgcagta---taagtttgtgtcatttacataatatttaactgctgctcataaatatttcctatgctt--caattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
ccagat---gtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
 |||||   |   | ||   || |  | ||||   || ||||      ||   |  |  ||  |    || |   || | |     ||||||||  |||||||||||||||| |||| ||||| |||||||||||||| |||||  | || ||||  |||||||| || ||| |||||||||| ||| | ||||| | ||| |
tcagattatgcagtcttaagtt-cacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcataaatatcgcgaatgcttga--attgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G152552_T01 (Zea mays), 3'ss of exon 2
---ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
   |   |   |    |   |  |   |           |   ||||  |||||||     || ||   || |  ||| ||| | | | |   | | || ||||| || |||||||||||||| |||||||| ||||| ||||| || || | ||| |||||||| |||||| | |||||||||||  | ||||||| ||| |
tacctgaacaatgccctcagtgtcaccaaaactgggtattcatctgtcattggatatttccacctaatattgtttaatgctattgtttcc---atatttccagATCCCTCACTTGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G820996_T01 (Zea mays), 3'ss of exon 2
-------ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
         | ||  |  |||  || || ||       |  |  || || | | || | |    |  | |     | | ||| ||| | |   |   | |  |  |||| || |||||||| ||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| | |||||||||||  | ||||||| ||| |
actatccataaatcatcatttagttcacatgg----tctggtaatttctctatctgaacaggtcttaacagtcaatgctaatgctattcttccc---atatctctagATCCCCCACTTGAGACCTGCCGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
-ccagatgttttttt-gctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttg--acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
 |   |  ||||  | || ||   ||  | ||| | || ||  | |  ||    |||||| ||   | ||||   ||   |    ||| | |  |    |||||||||| ||| | || |||||||| ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || || || |||||| |||| |
actgcacattttgatagcatttattgtagcacaatttggtttgtatactt----aaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334053|gb|FK026210.1|FK026210
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|7147580|gb|AW509502.1|AW509502
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|209719541|gb|BW669178.1|BW669178
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|7147442|gb|AW509364.1|AW509364
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31461069|gb|CD403097.1|CD403097
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCCGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|15286751|gb|BI470642.1|BI470642
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|254319919|gb|GR830943.1|GR830943
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|23051191|gb|BU577064.1|BU577064
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCATGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|254329218|gb|GR833590.1|GR833590
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|21601478|gb|BQ611809.1|BQ611809
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGTTTTTAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|13181279|gb|BG352611.1|BG352611
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|192332431|gb|FK024192.1|FK024192
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|193701027|gb|FK636846.1|FK636846
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|120531970|gb|EH260103.1|EH260103
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|5509773|gb|AI856331.1|AI856331
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|209706776|gb|BW678145.1|BW678145
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|213601413|gb|DB956705.1|DB956705
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31305702|gb|CD390905.1|CD390905
EST:     GCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: GCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|21602338|gb|BQ612669.1|BQ612669
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|5510165|gb|AI856549.1|AI856549
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|193538636|gb|FK495940.1|FK495940
EST:     GTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: GTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|213616852|gb|DB977051.1|DB977051
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|254319920|gb|GR830944.1|GR830944
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|193598502|gb|FK553716.1|FK553716
EST:     GTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: GTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|22931800|gb|BU548939.1|BU548939
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|120534700|gb|EH262833.1|EH262833
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|192334054|gb|FK026211.1|FK026211
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31561032|gb|CD486870.1|CD486870
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|254344850|gb|GR855614.1|GR855614
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|208251979|gb|GE045138.1|GE045138
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31311062|gb|CD396265.1|CD396265
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31307492|gb|CD392695.1|CD392695
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31464883|gb|CD406911.1|CD406911
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|213611911|gb|DB958921.1|DB958921
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|151408395|gb|EV278203.1|EV278203
EST:     AGAGAGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|213590841|gb|DB975083.1|DB975083
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCAAAATTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31459706|gb|CD401734.1|CD401734
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31459787|gb|CD401815.1|CD401815
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31308450|gb|CD393653.1|CD393653
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|10237092|gb|BE805980.1|BE805980
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|151405542|gb|EV275356.1|EV275356
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|193401336|gb|FK369215.1|FK369215
EST:     CCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: CCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|16997249|gb|BM086621.1|BM086621
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|209697014|gb|BW667004.1|BW667004
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|31306394|gb|CD391597.1|CD391597
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
EST: gi|19271084|gb|BM887340.1|BM887340
EST:     AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGG                         ATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGgtgcgctttc ... acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG
     ataaaattacatatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccagatgtttttttgctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - -tgcttta
- - - - - - - - - - -gtgaggg
- - - - - - - - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttatgc