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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcagAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAG

Basic information

species Glycine max
transcript GLYMA01G04920.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04920.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcagAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAG
          |  | |   |  |||| |||||   ||   |     |||   | | |    |     | |||| |  |   ||  || |  ||  | ||||||||| |||||  | ||| |||||||||||||  ||||||| ||||||||||| |||| | |||| |
----------gtgagtacattatttttttattgtgtt---atggagttacagtctgctacaatag--attttgatattgacattgttctc-gtaactttgcagAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTTTTTGACACTGACCG

upper sequence: GLYMA01G04920.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattt------------tgagtttc-cttgcagAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAG
||||||| ||  || |  |||  ||| || |  | |       |   |||  | |  | |||   ||||| | ||     ||||  |             || ||| | ||||||| ||| |||| | |||| | || ||||| || |||||||| |||||||||||||| ||||||||||
gtgagtttttacaa-ttcctaaatttcttttaccatagatgtcaa--tatagtgtttgaagatggttaatgtcttcgccttatgcatcccacaacatatatgtgttgctcttgcagGACTGATCCCCATTTACCTGAGATGCCAATCGTTTATGCAAGTGATGCCTTCTTAAAATTGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcagAACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAG
               ccttaat  putative branch site (score: 4)
                                            tttccttgc  putative PPT
                 ttaatttgtt  TA-rich tract