1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgtttttcagtgttgagtagtgttaacttcaacactagctagtgcaggattgttgtgtttggttaacagtagtgagtttataactttatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCTGAAGTTAACTCTGGTGATTGTTCTACCCCACCTGTTTATGGGAACTGT
species | Glycine max |
transcript | GLYMA01G03940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCEST: gi|12689978|gb|BG156314.1|BG156314
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCEST: gi|298168957|gb|HO020261.1|HO020261
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCEST: gi|298188019|gb|HO031976.1|HO031976
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCEST: gi|16348841|gb|BI974436.1|BI974436
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACC
caggattgttgtgtttggttaacagtagtgagtttataactttatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCTGAAGTTAACTCTGGTGATTGTTCTACCCCACCTGTTTATGGGAACTGT
ttataac putative branch site (score: 2)
agtttataactttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttttcagtgttgagtagtgttaacttcaacactagctagtgcaggattgttgtgtttggttaacagtagtgagtttataactttatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCATCAGCAGCACCTGAAGTTAACTCTGGTGATTGTTCTACCCCACCTGTTTATGGGAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG