1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctaataattataataaaattaacaaactaatattttgttgataaaaaataaaaataatgagctacctcgtacgcgttttggtttctgtttttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
species | Glycine max |
transcript | GLYMA01G03720.6 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACEST: gi|120532659|gb|EH260792.1|EH260792
genomic: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACEST: gi|192296129|gb|FG989489.1|FG989489
genomic: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACEST: gi|6481602|gb|AW200873.1|AW200873
genomic: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGAC
EST: ACGAGGTCTGACCAAGCTTCTCAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACEST: gi|298168878|gb|HO009808.1|HO009808
genomic: ACGA-GTCTGACCAAGCTTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACEST: gi|6070604|gb|AW099991.1|AW099991
genomic: GCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGAC
EST: CAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTTTTAAG TGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGA
genomic: CAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGC-TTCTCAGgtaactcttt ... ttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGA
aaataaaaataatgagctacctcgtacgcgttttggtttctgtttttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
ttttggtttctgtttt CT-rich tract
tgtttttttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaataattataataaaattaacaaactaatattttgttgataaaaaataaaaataatgagctacctcgtacgcgttttggtttctgtttttttctttagTGAGAAAGCTGAGCTCGGTGGCGTTGCCGCCGCAAAGATAAAGGAGCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - -aataaaa
- - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacctc