1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acaacttgcttttgctcttttccttgattatcaatagcaatttgcctacttgtcggagtaattaatagattgatatcattgatttgtgtgtgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG
species | Glycine max |
transcript | GLYMA01G03720.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTG GGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTGEST: gi|20813446|gb|BQ297924.1|BQ297924
genomic: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTGgtactctctt ... tgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTG
EST: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTG GGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTGEST: gi|209715498|gb|BW684743.1|BW684743
genomic: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTGgtactctctt ... tgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTG
EST: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTG GGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTG
genomic: CAAGCTAGAACAAAGTTCAACCACACTAAACCAAATTAGCTACCCTTTTGgtactctctt ... tgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTG
ctacttgtcggagtaattaatagattgatatcattgatttgtgtgtgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG
taattaatagattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaacttgcttttgctcttttccttgattatcaatagcaatttgcctacttgtcggagtaattaatagattgatatcattgatttgtgtgtgcatgacagGGTAAAGAGAGTCATGGCTGGAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - -gcttttg
- - - - - - - - - -ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtg