1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttacccgaacaagacttttcttcgttacaactgctagctattgctattgctatttctatcgctaaggttaatgcaatgttaatggtttggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAGGGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGTGAAGA
species | Glycine max |
transcript | GLYMA01G03610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAEST: gi|19934429|gb|BQ079459.1|BQ079459
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
EST: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAEST: gi|14126517|gb|BG790955.1|BG790955
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
EST: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAAGGAAGAAATAA-TEST: gi|18717773|gb|BM522996.1|BM522996
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAA-TAAAT
EST: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
ctattgctatttctatcgctaaggttaatgcaatgttaatggtttggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAGGGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGTGAAGA
tgttaat putative branch site (score: 3)
tttctc putative PPT
tatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacccgaacaagacttttcttcgttacaactgctagctattgctattgctatttctatcgctaaggttaatgcaatgttaatggtttggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATAGGGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA