1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaattcataatcttttaccactctacacgtggctcatgttgcatggtgcatatcaaactcgagtaatgattaatgaatttgtttctgtttgtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTG
species | Glycine max |
transcript | GLYMA01G03530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAA ATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTEST: gi|213600039|gb|DB966499.1|DB966499
genomic: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAAgtgagtactc ... gtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAA ATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTEST: gi|33390369|gb|CA853564.1|CA853564
genomic: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAAgtgagtactc ... gtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAA ATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTEST: gi|207817255|gb|GD788866.1|GD788866
genomic: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAAgtgagtactc ... gtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAA ATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTT
genomic: AGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAAgtgagtactc ... gtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTT
gtgcatatcaaactcgagtaatgattaatgaatttgtttctgtttgtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTG
gattaat putative branch site (score: 3)
taatgattaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattcataatcttttaccactctacacgtggctcatgttgcatggtgcatatcaaactcgagtaatgattaatgaatttgtttctgtttgtgtttcaagATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTG
- - - - - - - - -ccactct
- - - - - - - - - - - - -cacgtgg
- - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact