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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaaattaaaatagtatctattttttttttccatcttagttcttactagttcgatttaacgcacgtgggaaatgaccgaaacggttcgttttatggtgcagGGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACGTGAGTTTTGTTGAATCTTCGTCGCAGAGCGTCGGCCACGTGCCGCCGCC

Basic information

species Glycine max
transcript GLYMA01G02760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023028|gb|BM094062.1|BM094062
EST:     TTCCGCTACTTCCTCACATCACTACTACCTCGACAACTTGTACACCAACG                         GGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACG
genomic: TTCCGCTACTTCCTCACATCACTACTACCTCGACAACTTGTACACCAACGgtaataaaaa ... tatggtgcagGGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttcgatttaacgcacgtgggaaatgaccgaaacggttcgttttatggtgcagGGTGGGGCAACGGGAGCCTCAAGTTTGAGCAGAATCTCAACCACAGTGACGTGAGTTTTGTTGAATCTTCGTCGCAGAGCGTCGGCCACGTGCCGCCGCC
       atttaac  putative branch site (score: 3)
                                      ttcgtttt  putative PPT
       atttaa  TA-rich tract