1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttattaatgaaaatgatagatagacaatctttagcttggattagatggttaagtgattgcttctgggtggaatgtggtctcatgtttgcgtgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGCTTGATATCCAAATATCCTTATTGGAACAGAACCTTGGGTGCTGATCACT
species | Glycine max |
transcript | GLYMA01G02630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAG GGNNNNNNNNATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGCEST: gi|6482067|gb|AW201338.1|AW201338
genomic: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAGgtattttttt ... tgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGC
EST: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAG GGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGCEST: gi|6915828|gb|AW397358.1|AW397358
genomic: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAGgtattttttt ... tgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGC
EST: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAG GGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGCEST: gi|42722679|gb|CK768578.1|CK768578
genomic: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAGgtattttttt ... tgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGC
EST: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCTCAAGATGCGTGGCAAG GGCACGAGTTATGAGAATATGACGATCATTGCACAAAAACTATGTGGAGAGEST: gi|254319654|gb|GR830786.1|GR830786
genomic: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAGgtattttttt ... tgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAA-CTATGTGGAGAG
EST: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAG GGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGC
genomic: AGGCACACCTCTTCTTCATTCCCATCTCGTGTCACAAGATGCGTGGCAAGgtattttttt ... tgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattaatgaaaatgatagatagacaatctttagcttggattagatggttaagtgattgcttctgggtggaatgtggtctcatgtttgcgtgttatgcagGGCACGAGTTATGAGAATATGACGATAATTGTACAAAACTATGTGGAGAGCTTGATATCCAAATATCCTTATTGGAACAGAACCTTGGGTGCTGATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - -gcttgga
- - - - - - - - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc