Sequence
atgc intronic sequence ATGC exonic sequencegtttttattgaaacagtctttgttggcattaatggcttatcattttcgttattgtcaagattggattttggttcacccagctcccttattttgtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
Basic information
species | Glycine max |
transcript | GLYMA01G01740.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
--gtttttattgaaacagtctttgttggcattaatggcttatcattttcg-----ttattgtc----aagattggattttggttcacccagctccctt-atttt----gtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
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gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21255865|gb|BQ452753.1|BQ452753EST: CTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAG GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCT
genomic: CTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattg ... tattttgtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttcgttattgtcaagattggattttggttcacccagctcccttattttgtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
ctcccttattttgt CT-rich tract
ttattttgta TA-rich tract