1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacagagttcatagaatcatagtctatctcatctatggttagtttctatttacctgcaaaagtgatattatttaatgctctatttcttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTCGGAGAGCTACTTGCCCATCCTATA
species | Glycine max |
transcript | GLYMA01G01460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|207794208|gb|GD765722.1|GD765722
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: GGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|151396447|gb|EV266324.1|EV266324
genomic: GGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|23052675|gb|BU577167.1|BU577167
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|27426218|gb|CA937738.1|CA937738
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|193679433|gb|FK621043.1|FK621043
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: CGTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTEST: gi|23052846|gb|BU577337.1|BU577337
genomic: C-TATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCT
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|151413131|gb|EV282939.1|EV282939
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|6501937|gb|AW203310.1|AW203310
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|308098687|gb|HO760428.1|HO760428
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|151397751|gb|EV267624.1|EV267624
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|15204623|gb|BI427391.1|BI427391
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACEST: gi|11688213|gb|BF595889.1|BF595889
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
EST: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTG GATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
genomic: TCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGgtatgtcatc ... gatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTAC
ctatttacctgcaaaagtgatattatttaatgctctatttcttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTCGGAGAGCTACTTGCCCATCCTATA
atttaat putative branch site (score: 4)
atattatttaatgctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagagttcatagaatcatagtctatctcatctatggttagtttctatttacctgcaaaagtgatattatttaatgctctatttcttgtgatttgttagGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTCGGAGAGCTACTTGCCCATCCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -acctgca