1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccagtgactttatcttacatttccaacttccataggtcttgggtagtattactgatttactgaaagataatggctgataattttctttaattttttatagATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAAT
species | Glycine max |
transcript | GLYMA01G01390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAG ATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCEST: gi|19269661|gb|BM885917.1|BM885917
genomic: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAGgtatttgctt ... ttttttatagATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATC
EST: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAG ATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCEST: gi|193681291|gb|FK622887.1|FK622887
genomic: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAGgtatttgctt ... ttttttatagATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATC
EST: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAG ATATCAGATGTCATGTGTGATGCTGGTA
genomic: GAAACCCTCTCGGCCTCGTGCTCTCACCCACTAGAGAGCTAGCTCAACAGgtatttgctt ... ttttttatagATATCAGATGTCATGTGTGATGCTGGTA
gtattactgatttactgaaagataatggctgataattttctttaattttttatagATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAAT
ttttctttaatttttt CT-rich tract
tgataattttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagtgactttatcttacatttccaacttccataggtcttgggtagtattactgatttactgaaagataatggctgataattttctttaattttttatagATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-cagtgac
- - - - - - - - - - -tccaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga