1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catattccgtgtcctacaccgtaacaattctcatggaacatgatattagcatttgatgagatcattgtagtattgccttttcttactatttcgttttcagATTGCCATCAAGCGTGAAGAAGGTCCTCCACCCAATAATTTTCTGTGCGGCATCTGCAGAAGTAACAGCAGTTGTTTTTGGGTTTCTTTCCAAGTCAGGG
species | Glycine max |
transcript | GLYMA01G01340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCCATTCTTGCTTGCTTCCACGGTGTTAGGCTACATGATTGGTTCTGG ATTGCCATCAAGCGTGAAGAAGGTCCTCCACCCAATAATTCTCTGTGCGGC
genomic: CTTCCATTCTTGCTTGCTTCCACGGTGTTAGGCTACATGATTGGTTCTGGgtaaaggttc ... tcgttttcagATTGCCATCAAGCGTGAAGAAGGTCCTCCACCCAATAATTTTCTGTGCGGC
ttagcatttgatgagatcattgtagtattgccttttcttactatttcgttttcagATTGCCATCAAGCGTGAAGAAGGTCCTCCACCCAATAATTTTCTGTGCGGCATCTGCAGAAGTAACAGCAGTTGTTTTTGGGTTTCTTTCCAAGTCAGGG
ttcttac putative branch site (score: 2)
ccttttcttactattt CT-rich tract
ttttcttactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattccgtgtcctacaccgtaacaattctcatggaacatgatattagcatttgatgagatcattgtagtattgccttttcttactatttcgttttcagATTGCCATCAAGCGTGAAGAAGGTCCTCCACCCAATAATTTTCTGTGCGGCATCTGCAGAAGTAACAGCAGTTGTTTTTGGGTTTCTTTCCAAGTCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - ttccgtg
- - - - - - -ctacacc
- - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - catgata
- - - - - - - - - - - - - - - - - - - - - - - - gcatttg