1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttaagttaggccatatttgtaaaattattttacaattttgtttgcgtgctgctgaaattatatcacagatattctgagtcttgatgtggatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATTTTGATGAGAATAAGCCAATGTGTAAAAGGTTGAATGTTAAAGTACTTC
species | Glycine max |
transcript | GLYMA01G00570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|37997202|gb|CF808791.1|CF808791
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|192301500|gb|FG994096.1|FG994096
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|15203569|gb|BI426337.1|BI426337
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAACTGGAAGA-CACCCTGAAATTCTTTTCCTCAAAGTAAAEST: gi|192301499|gb|FG994095.1|FG994095
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTG-AAGAACACCCTGAAATTCTTTTCCTCAAAGTAAA
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|31460006|gb|CD402034.1|CD402034
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|7925275|gb|AW831301.1|AW831301
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|192332349|gb|FK026014.1|FK026014
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATEST: gi|151395264|gb|EV265135.1|EV265135
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
EST: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAG CTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
genomic: TTGAATTTTATGGAACTTGGTGTGCTTCTTGCCGAGCATTATTCCCCAAGgtcctcttgc ... gatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAAT
gcgtgctgctgaaattatatcacagatattctgagtcttgatgtggatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATTTTGATGAGAATAAGCCAATGTGTAAAAGGTTGAATGTTAAAGTACTTC
tcttgat putative branch site (score: 4)
tgaaattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaagttaggccatatttgtaaaattattttacaattttgtttgcgtgctgctgaaattatatcacagatattctgagtcttgatgtggatttggcagCTATGCAGAACAGCTGAAGAACACCCTGAAATTCTTTTCCTCAAAGTAAATTTTGATGAGAATAAGCCAATGTGTAAAAGGTTGAATGTTAAAGTACTTC
- - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg