1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatgtctaattctactattatttttgaagatttagctgactggattaaggtttaatttgtttaccatggcatgggggctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATGCCCTGGGGAAAGACCTTGTGATGGCCTTGACGCTTGTTGTATGAAGCA
species | Glycine max |
transcript | GLYMA01G00540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|21678137|gb|BQ630488.1|BQ630488
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|192306411|gb|FG996157.1|FG996157
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|21677989|gb|BQ630340.1|BQ630340
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|22931117|gb|BU548256.1|BU548256
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|208277941|gb|GE074906.1|GE074906
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|298192751|gb|HO033185.1|HO033185
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATEST: gi|298197190|gb|HO041933.1|HO041933
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTCTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
tagctgactggattaaggtttaatttgtttaccatggcatgggggctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATGCCCTGGGGAAAGACCTTGTGATGGCCTTGACGCTTGTTGTATGAAGCA
ggctaat putative branch site (score: 3)
attaaggtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgtctaattctactattatttttgaagatttagctgactggattaaggtttaatttgtttaccatggcatgggggctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGATGCCCTGGGGAAAGACCTTGTGATGGCCTTGACGCTTGTTGTATGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC