1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctacatttttcttttcagatttgtatcacatttttatctcttgaacctcttgcggttattttttgctttgtaatcctttatgtatcgtatgtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT
species | Glycine max |
transcript | GLYMA0169S00210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|193542303|gb|FK497521.1|FK497521
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGG-CGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|151396143|gb|EV266020.1|EV266020
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|192296978|gb|FG990294.1|FG990294
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|213607100|gb|DB965070.1|DB965070
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|193510516|gb|FK468022.1|FK468022
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGEST: gi|213605771|gb|DB968603.1|DB968603
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
EST: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCG GTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
genomic: CCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCCAAAGAAGCGgtatagttca ... gtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAG
cctcttgcggttattttttgctttgtaatcctttatgtatcgtatgtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT
ttattttttgcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacatttttcttttcagatttgtatcacatttttatctcttgaacctcttgcggttattttttgctttgtaatcctttatgtatcgtatgtttgcacagGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
ctacatt
- - - - - - - - - - - - - - - - - - - -cttgaac
- - - - - - - - - - - - - - - - - - - - - - - ctcttgc