1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agcaacatctttgtgctcaaccgttcaagaatcccccctcccccatctctttttagtcttgtccttatttttcatgttaacattagtagtatgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG
species | Glycine max |
transcript | GLYMA0084S00210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCATTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|120529166|gb|EH257300.1|EH257300
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|209707530|gb|BW664989.1|BW664989
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|209727804|gb|BW658728.1|BW658728
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|120495419|gb|EH223586.1|EH223586
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|120529421|gb|EH257555.1|EH257555
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|213604531|gb|DB970651.1|DB970651
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|20075803|gb|BQ094586.1|BQ094586
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|213601172|gb|DB964665.1|DB964665
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|21255897|gb|BQ452785.1|BQ452785
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|213618118|gb|DB965275.1|DB965275
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|192299755|gb|FG990050.1|FG990050
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|10231986|gb|BE800874.1|BE800874
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|213608298|gb|DB972640.1|DB972640
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAEST: gi|17519052|gb|BM188094.1|BM188094
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|17400112|gb|BM176894.1|BM176894
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|13181127|gb|BG352467.1|BG352467
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|12489534|gb|BG043056.1|BG043056
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTGTGGAACTTAATG GCGTTACCATAAAAGEST: gi|209724769|gb|BW672551.1|BW672551
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAG
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|120494745|gb|EH222912.1|EH222912
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|9258335|gb|BE346482.1|BE346482
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|213587655|gb|DB971378.1|DB971378
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATAC-CTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|9902884|gb|BE611852.1|BE611852
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTAEST: gi|9902620|gb|BE611651.1|BE611651
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
EST: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATG GCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
genomic: TGTTTCTAAGGATGAAATTCCTACAGACGAATATGCTTTGGAACTTAATGgtagcaccta ... atgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTA
tctctttttagtcttgtccttatttttcatgttaacattagtagtatgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG
tgttaac putative branch site (score: 2)
ttatttttcatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaacatctttgtgctcaaccgttcaagaatcccccctcccccatctctttttagtcttgtccttatttttcatgttaacattagtagtatgatttcagGCGTTACCATAAAAGAAACAGCAAAATTAGGCCCTCGCCCAGAGAAGCCTATTGAAATATATGAATTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - ctttgtg
- - - - - - - -ctcaacc
- - - - - - - - - - - - - - - atccccc
- - - - - - - - - - - - - - - - - - -ctccccc