1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gttagtagaaggtacaaattgatattgtgaatgagaatttataggtccagtattcaaaattttcattattttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAG
species | Glycine max |
transcript | GLYMA20G25120.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAEST: gi|14999379|gb|BI320344.1|BI320344
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAEST: gi|7685172|gb|AW755820.1|AW755820
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAEST: gi|5753691|gb|AI960978.1|AI960978
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAEST: gi|208043203|gb|GD837849.1|GD837849
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: ATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAEST: gi|21601019|gb|BQ611350.1|BQ611350
genomic: ATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
attgtgaatgagaatttataggtccagtattcaaaattttcattattttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAG
ttatttt CT-rich tract
agtattcaaaattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagaaggtacaaattgatattgtgaatgagaatttataggtccagtattcaaaattttcattattttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG