1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aaaggtagatcggaaatctcctaacaattcctgcatatttccttcactcacagttttatgtgtatataaattcttttattttattttaatgctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATGTAGCAATGTTTTCTGGAAGAGAAAGTGATTTATAGAACAGAGAGAACAC
species | Glycine max |
transcript | GLYMA19G43270.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCT GTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATGEST: gi|14205738|gb|BG839416.1|BG839416
genomic: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCTgtaagcaccc ... gctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATG
EST: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCT GTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATGEST: gi|120531697|gb|EH259830.1|EH259830
genomic: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCTgtaagcaccc ... gctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATG
EST: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCT GTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATG
genomic: CATGCTATGCAACAATGGCCATAAGGGAGCTGCTGAAGACTTCAACATCTgtaagcaccc ... gctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATG
actcacagttttatgtgtatataaattcttttattttattttaatgctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATGTAGCAATGTTTTCTGGAAGAGAAAGTGATTTATAGAACAGAGAGAACAC
agttttatgtgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggtagatcggaaatctcctaacaattcctgcatatttccttcactcacagttttatgtgtatataaattcttttattttattttaatgctgttgcagGTTGCATATCACAAGACATTAAACCAATAGTATGCACACAGCTACCTCATGTAGCAATGTTTTCTGGAAGAGAAAGTGATTTATAGAACAGAGAGAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - -cctaaca
- - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgt