Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaattattaataaaaacagttcactttaacattttcttaacatgactaagaaatggcctttactaatctgtctctgtttataatggttttaGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAATGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAG

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 3'ss of exon 18
ggtaattattaataaaaacagttcactttaacattttcttaacatgactaagaaatggcctttactaatctgtctctgtttataatggttttaGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAATGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAG-
        | || |   |  | ||  |  || | |  | |  ||| ||  |   ||    |||   |       | |||   |   | | |||||| |||||||| ||||| || ||||| ||| |||| |||||| |||| ||||| |||||||| |||||  ||||||| |||||||||||||| |||||  
-------gtaaacattcattgatcgatcaaaaagtggcatg-catcacccaattatttattttctcagatgaattttgtgcctg--gctattagGATTCCAAAGCTCAAGTGACTGCAATTCATCTAATAATTGGGACTCTGCAGAGGATGAATGTTTTTGGTGTTGAGAATAGGGATACATTAACGCACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411598|gb|EV281409.1|EV281409
EST:     GCTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGC                         GGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCA
genomic: GCTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCggtaattatt ... aatggttttaGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCA
EST: gi|9564171|gb|BE473680.1|BE473680
EST:     GCTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGC                         GGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCA
genomic: GCTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCggtaattatt ... aatggttttaGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacatgactaagaaatggcctttactaatctgtctctgtttataatggttttaGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAATGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAG
                        tactaat  putative branch site (score: 1)
                                        tttataatggtttta  TA-rich tract