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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaataatacttttgataaaaggaggttatacactctttttcgttccagtttttctggtctgatacgttgttttaatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTAGGCTCGTCAAGTATCGATGATCCTGCACAATATATTACG

Basic information

species Glycine max
transcript GLYMA17G14450.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703155|gb|BW673314.1|BW673314
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|213606905|gb|DB974354.1|DB974354
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|58014859|gb|CX701601.1|CX701601
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|254340092|gb|GR858217.1|GR858217
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|208143354|gb|GD943268.1|GD943268
EST:     TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|254321303|gb|GR824620.1|GR824620
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|6666591|gb|AW278050.1|AW278050
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|208193157|gb|GD991202.1|GD991202
EST:     ATTGTTGGTGGAGTCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: ATTGTTGGTGGAG-CAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|213613420|gb|DB974617.1|DB974617
EST:     ACGAATATTTATATTCATTGTTAGACAAGCAACCAGAAGAGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: ACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|209720988|gb|BW682467.1|BW682467
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
EST: gi|208292619|gb|GE093741.1|GE093741
EST:     TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA
genomic: TGGGGCAACGAATATTTATATTCATTGTTGGTGGAGCAACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacactctttttcgttccagtttttctggtctgatacgttgttttaatcatcagCTTAGGATATGCCACAAGCTTACTGGTAAGCTGAAGAGGGAAGTTATTCTAGGCTCGTCAAGTATCGATGATCCTGCACAATATATTACG
                                          ttttaat  putative branch site (score: 3)
                                       ttgtttt  CT-rich tract
                                       ttgttttaat  TA-rich tract