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...tctgtttggtatctatcaccaaattattgaattataaccctggttccaagtgttgttattgacttgaatatggcatttgttcttatgtctaacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGG
species | Glycine max |
transcript | GLYMA17G05390.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG GGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGEST: gi|208049562|gb|GD848465.1|GD848465
genomic: TCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGgtatatttaa ... aacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATG
EST: ATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG GGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAACTEST: gi|208340160|gb|GE133202.1|GE133202
genomic: ATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGgtatatttaa ... aacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAA-T
EST: ATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG GGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAACT
genomic: ATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGgtatatttaa ... aacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAA-T
ccaagtgttgttattgacttgaatatggcatttgttcttatgtctaacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGG
gtctaac putative branch site (score: 2)
ttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttggtatctatcaccaaattattgaattataaccctggttccaagtgttgttattgacttgaatatggcatttgttcttatgtctaacattgcagGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-ctgtttg
- - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - tggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg