1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...attttggagctcatcatccttgttaccaaagaaatgtttttcctttataaaaaccgttcattttgcatttcatctaacactttggagtgttaacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTATTGATGCATTTGTTTCTAATGGCAATCGCTACAATCTGCTCCATTCTG
species | Glycine max |
transcript | GLYMA17G03570.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCAT GATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTEST: gi|208046991|gb|GD846552.1|GD846552
genomic: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCATgtaagtttaa ... taacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATT
EST: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCAT GATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTEST: gi|193576796|gb|FK537993.1|FK537993
genomic: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCATgtaagtttaa ... taacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATT
EST: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCAT GATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTEST: gi|208337564|gb|GE136416.1|GE136416
genomic: ACTTAGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCATgtaagtttaa ... taacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATT
EST: AGTTGTTGGTGCNG-CCGGTTCATTCGAACTATTCTCTCTCGCCAT GATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATT
genomic: AGTTGTTGGTGCTGTCCGGTTCATTCGAACTATTCTCTCTCGCCATgtaagtttaa ... taacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATT
tataaaaaccgttcattttgcatttcatctaacactttggagtgttaacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTATTGATGCATTTGTTTCTAATGGCAATCGCTACAATCTGCTCCATTCTG
tgttaac putative branch site (score: 2)
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttggagctcatcatccttgttaccaaagaaatgtttttcctttataaaaaccgttcattttgcatttcatctaacactttggagtgttaacatgcagGATGAACATCTGATAAATTATTTTGTTAGGAATAATGTTCTGAAGCCAATTATTGATGCATTTGTTTCTAATGGCAATCGCTACAATCTGCTCCATTCTG
- - - - - - - - - - tgttacc
- - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagtg