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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaacattttcgtgagtatgatttttttaattattatatgcatatgctgtgcttataagatgtttgtctttttcatgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG

Basic information

species Glycine max
transcript GLYMA16G19580.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302190|gb|FG996612.1|FG996612
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
EST: gi|58014702|gb|CX701444.1|CX701444
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
EST: gi|58025067|gb|CX711808.1|CX711808
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
EST: gi|192302191|gb|FG996613.1|FG996613
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
EST: gi|207683288|gb|GD666513.1|GD666513
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGGG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
EST: gi|22523089|gb|BU081900.1|BU081900
EST:     ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAG                         ATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT
genomic: ATGCTGGTCTTTCTTTTACTGGAAAGGATGAAACAGGTCAACGCATGGAGgtatcaacat ... catgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattattatatgcatatgctgtgcttataagatgtttgtctttttcatgcttcagATTCTTGAACTACCTAACCATCCTTATTTTATTGGTGCTCAATTCCATCCTGAATTTAAATCAAGACCAGGAAAACCTTCTCCTTTGTTCTTAG
 ttttaat  putative branch site (score: 3)
                                      tctttttcatgcttc  putative PPT
                        ttataagat  TA-rich tract