1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ggataatgcattagagtgatgctatcaatgtttatttttcaagtttatctctccatctttgtattcctaactaacaaggatatttggttttctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTG
species | Glycine max |
transcript | GLYMA16G01660.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAG AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAEST: gi|193615741|gb|FK561954.1|FK561954
genomic: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
EST: CCGGGCAACCAGTGCCTGCACAAG AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAEST: gi|193630403|gb|FK580862.1|FK580862
genomic: CCGGGCAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
EST: CCGGGCAACCAGTGCCTGCACAAG AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCEST: gi|19269159|gb|BM885415.1|BM885415
genomic: CCGGGCAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTC
EST: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAG AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAEST: gi|208209447|gb|GE003871.1|GE003871
genomic: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
EST: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAG AGTCGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAEST: gi|193341791|gb|FK305575.1|FK305575
genomic: CCTGATGATGGAATGGCTCCTGACCACCGGGCAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
EST: CAACCAGTGCCTGCACAAG AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
genomic: CAACCAGTGCCTGCACAAGgtggatgtta ... tctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGA
tatctctccatctttgtattcctaactaacaaggatatttggttttctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTG
aactaac putative branch site (score: 1)
ttttctttgtc putative PPT
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggataatgcattagagtgatgctatcaatgtttatttttcaagtttatctctccatctttgtattcctaactaacaaggatatttggttttctttgtcagAGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTG
- - - tgcatta
- - - - - - - - tgatgct
- - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca