1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...atcctgaatttaaaaggggtttaggtgaaattatagggtgcaagaaccaccttttctttttgttaccttgggttaacatttctattttggtggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCACACTAGAGAAGCTCGAGCAATTGGTTGCCAAATCATCGTGAAATTTGA
species | Glycine max |
transcript | GLYMA15G42300.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|192324528|gb|FK016449.1|FK016449
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|254349123|gb|GR860395.1|GR860395
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|15813913|gb|BI786188.1|BI786188
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|254349122|gb|GR860394.1|GR860394
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|6666249|gb|AW277708.1|AW277708
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|17020863|gb|BM091897.1|BM091897
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|15815591|gb|BI787866.1|BI787866
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|5175401|gb|AI759734.1|AI759734
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: GCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|7795790|gb|AW781187.1|AW781187
genomic: GCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCEST: gi|213598475|gb|DB975934.1|DB975934
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
EST: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAG TTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
genomic: ATTATACTGTTCTCTTTGGTGTATCAAGGAGCTTTGGAGTTGGCCCTCAGgtttgttgtg ... tggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTC
accaccttttctttttgttaccttgggttaacatttctattttggtggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCACACTAGAGAAGCTCGAGCAATTGGTTGCCAAATCATCGTGAAATTTGA
ggttaac putative branch site (score: 3)
ttaacatttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctgaatttaaaaggggtttaggtgaaattatagggtgcaagaaccaccttttctttttgttaccttgggttaacatttctattttggtggatttcagTTGATATGGGATAGGGCTCTTGGAATGCCACTTGAAAGGCCCAAAAGTGTCACACTAGAGAAGCTCGAGCAATTGGTTGCCAAATCATCGTGAAATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-tcctgaa
- - - - - - - -ggggttt
- - - - - - - - - - - - - - - - - - - tgcaaga