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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtaataattatcgcccatcttacatcttttggtgaaacttccccattgtcttgcactaacatctattttaaaccttatgtttctgcagATTTTCTTTCAGACAAAGTGTGGCGTTTTGGAAAGAAAGAATTGGTCACACAACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAGTCCTATCATGAT

Basic information

species Glycine max
transcript GLYMA15G16270.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 20
gtatgttgtaataattatcgcccatcttacatcttttggtgaaacttccccattgtcttgcactaacatctattttaaaccttatgtttctgcagATTTTCTTTCAGACAAAGTGTGGCGTTTTGGAAAGAAAGAATTGGTCACACAACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAGTCCTATCATGAT
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gtatgaagcagctctgatc-ttcatctcacattctctttt-----ctccctgctaacct-ctttttcatctcatcttcatcaca------tgcagAGCTGCAATGAGACAACATATGGCCATCTGGAAGGAGAAACTTGGCCACACCACCATTGATTTAGGAATAGCCCCTATGAAGCTAGAATCCTATGACAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacttccccattgtcttgcactaacatctattttaaaccttatgtttctgcagATTTTCTTTCAGACAAAGTGTGGCGTTTTGGAAAGAAAGAATTGGTCACACAACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAGTCCTATCATGAT
                    cactaac  putative branch site (score: 1)
                                            tgtttct  putative PPT
                       taacatctattttaaa  TA-rich tract