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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaatgtcattcttgtcctttatctttgcttgacacttatctaactgcaggcatactaacaaaggtactatctcattttcttttttggtgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 6
gaaaatgtcat-tcttgtccttt---atctttgcttgacacttatctaactgcaggcatactaacaaaggtactatctcattttcttttttggtgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA
   | | |||| ||    |||     || ||  |||   |    | | |||    |  |  | |      |   |  ||| | | |  |||  |||   ||||||||||  ||||||  |||| ||| |||||||||||||||||||||||  | ||||||||  | ||||| || ||||| |||||| | || |||||
--cattttcatctcccaacctgggaaatattcacttattaaccttttcacttggtgtctgatcatttgattggcacttcaatatatgattt--tgtttcttcagGAGGCTCACAAGCAAAGTAGCAACTGGTTACCTCCTCCATGGGCAATTGTTGCAATGGTTGTCCTTGGCTTCAATGAGTTTATGCTCCTTCTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021487|gb|CX708228.1|CX708228
EST:     ATTTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCCTACAAGCGGAGT-ACAAATTGGTTACCTCCTCCATGGGCAATAAT
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAAC-AATTGGTTACCTCCTCCATGGGCAATAAT
EST: gi|57575891|gb|CX548862.1|CX548862
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCNTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: gi|21889070|gb|BQ742283.1|BQ742283
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: gi|58025332|gb|CX712073.1|CX712073
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: gi|19271184|gb|BM887440.1|BM887440
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: gi|298194599|gb|HO043071.1|HO043071
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: gi|6134477|gb|AW132870.1|AW132870
EST:     AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGGCTCAG                         GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaggcatactaacaaaggtactatctcattttcttttttggtgtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA
         tactaac  putative branch site (score: 0)
                            tcattttctttttt  TA-rich tract