Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtggtgtcagtgttttctataacttggaacttattaaacaattgttgacaaagctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 19
-------------gtatggtg-gtgtcagtgttttctataacttggaacttattaaacaattgttgacaaagctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT
             || | ||  |        |||| | | ||||   || |        ||| ||  | || | |   |   | | | |||| ||| |||||||| | ||||||  | || |||||||| ||||||||||| ||||||||||| |  || || ||||| || ||||||||| | ||| | |
gtatttttgctacgtttagtttgaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgt-catatctgcagGCTGCCAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 19
--gtatggtggtgtcagtgt---tttctataacttggaacttattaaac-------aattgttgacaaagctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT
   | || |    | ||| |    |||  |   |||  |||| | | |         ||| ||  | || | |   |   | | | |||| ||| |||||||| | ||||||  | || |||||||| ||||||||||| ||||||||||| |  || || ||||| || ||||||||| | ||| | |
gtatttgctacatttagtttaaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgt-catatctgcagGCTGCCAAAGAATACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 19
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 19
gtatggtggtgtcagtgttttctataacttggaacttattaaacaattgttgacaaag-ctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT
||||| || ||| | ||||   ||  |  || |  |||||    |||   |||||  | | |    |||| | | |||| |   || || || ||||||||| | || |||||||| ||||| ||||| ||||||||||| | ||| || || || |||||||||||||| || ||||
gtatg-tgctgt-attgttg--taagatgtgaattttattgtttaat--gtgacactgacgtgtccatgtctttgcagGCTTGCAAGGAGTACTGTGAGCAACTTGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCGTACGAAGGGCTGTACTTTTTCCTAGGTTCAT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 19
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 19
gtatggtggtgtcagtgttttct-----ataacttgga---acttattaaacaattg-ttgacaaagctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT
    |      ||| ||| ||||     || |    ||   |||| | ||   |||  |||     |||    |  || ||| |||  ||| |||||||||| |||||||||||| ||||||   ||| ||||||| |||||||||||||  ||||| || ||| |||||||||| || || || |
----gtacccatcattgtcttctgatggatgatccagatcgacttgtaaacttatttcttgctttcgctaatattggtctgtgcagACTGCCAAAGAATATTCTGAGCAATTGGGTGTTGATCAATGCGTAAAACTCTTTGAGCAATTTAAATCATACGAAGGATTGTACTTTTTTCTGGGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataacttggaacttattaaacaattgttgacaaagctttcttatgtgtgttcagGTTGCTAAAGAATATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCAT
                         tgttgac  putative branch site (score: 3)
          aacttattaaacaatt  TA-rich tract