Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatactatgttaagaccaccattgaatttccttcttgtaacctgataccctctccaaaactaaaattgttctgattatccgcatctttgttatgacagATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATT

Basic information

species Glycine max
transcript GLYMA13G44420.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 19
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 18
-tgaatactatgttaagaccaccattgaatttccttcttgtaacctgataccc-tctccaaaactaaaat--tgttctgattatccgcatctttgttatgacagATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATT
 ||||  | || || |      ||||| ||||   || |   |  |   |     |||||| |  ||||   ||| || || |    | ||||  ||    ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| | || ||||| |||||||| ||||| |||||||
ttgaaatccatcttgat----tcattggatttttctcatcccatattgcatttgcctccaacaagaaaacaatgtcctcatcagtttcttcttaattgctgcagATATCAAGGTTGATCTATACAAATTCCGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCATTTTCTTTGGAAGTGGCAGCGCAATGATCGTAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964569|gb|BM271302.1|BM271302
EST:     ATCTCAATGTAGATACCTTGAAGCTGCCTGAGAATGTCAGGGTGAACAAG                         ATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCT
genomic: ATCTCAATGTAGAT-CCTTGAAGCTGCCTGAGAATGTCAGGGTGAACAAGgtattttatt ... gttatgacagATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCT
EST: gi|192325091|gb|FK019052.1|FK019052
EST:     TGTCAGGGTGAACAAG                         ATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCT
genomic: TGTCAGGGTGAACAAGgtattttatt ... gttatgacagATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataccctctccaaaactaaaattgttctgattatccgcatctttgttatgacagATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCGTTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATT
                                        tctttgtt  CT-rich tract
            aaaactaaaattgtt  TA-rich tract