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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatttaatgtctcagtctccacacggtcacttttatcatctgcatttgtgctataacttccattcattgcatttattttaagaaatttatttgatcagGGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTCAGAAG

Basic information

species Glycine max
transcript GLYMA13G35440.1
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193512030|gb|FK467674.1|FK467674
EST:     AGGAACTTGACCTATCTAATAACAACATTGCAGTCCTTCCGCCCGAGCTG                         GGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTC
genomic: AGGAACTTGACCTATCTAATAACAACATTGCAGTCCTTCCGCCCGAGCTGgtgagaaaca ... atttgatcagGGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTC
EST: gi|17153404|gb|BM143337.1|BM143337
EST:     AGGAACTTGACCTATCTAATAACAACATTGCAGTCCTTCCGCCCGAGCTG                         GGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTC
genomic: AGGAACTTGACCTATCTAATAACAACATTGCAGTCCTTCCGCCCGAGCTGgtgagaaaca ... atttgatcagGGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtgctataacttccattcattgcatttattttaagaaatttatttgatcagGGTTTGCTGGAACCAAGCCTACAGGCACTGAGACTTGATGGGAATCCTCTCAGAAG
       ctataac  putative branch site (score: 3)
                                          tttattt  putative PPT
                  attcattgcatttatt  TA-rich tract