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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgaccttctctagtataatttaatttttgatctaccattgcatccaagtttggtctggaatatataactgttggttgctttcagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 19
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 3'ss of exon 16
-------------------------gttgtgacctt-ctctagtataatttaatttttgatctaccattgcatccaagtttggtctggaatatataactgttggttgc----tttcagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA
                          |||     || ||| ||| |||   ||   ||  | |||  ||    | | ||  |       |    |   |||    ||     || |||||||  |||||||| ||||| || |||||||| || || || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||| 
gtgattcaagaaacataatgagcttcttgcagtttttctcaagtgtaaaagaaggattagtttactgttattgctaggtgggactaaccactagtttttgtgaactgtaactttgcagGCTATGATTGGTGAATATTTGGGACAACATGAGGAGTTCCCTCTTGCTGTGATGCATGCTTATGTTGATTCAATGAAATTTTCGGGATTGAAGTTTGATG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 19
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 17
----------------gttgtgaccttctctagtataatttaatttttgatctaccattgcatccaagtttggtctgga-atatataactgttggttgct---ttcagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA
                 ||| |    |  ||   | ||| ||| | || || ||   ||   |   |    ||| |  | | || ||||| ||| | |||   | |||| ||  |||||||| || || || || ||||| || || || ||||||||||||||||| ||||| || |||||||| ||||| ||||| || |||||| 
gtgatttcaaaatttcattgagtgtcttgctgtaacaatataactgtt-atttaatgttatttgtcaaaagggtgtacacacatctaacttttgttagctatatgcagGTTATGATTGGTGAGTACTTGGGACAGCATGAGGAGTTCCCTCTTGCTGTGATGCATGCCTATGTTGACTCCATGAAGTTTTCAGGATTGAAGTTTGATG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 19
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 3'ss of exon 18
gttgtgaccttctctagtataatttaatttttgatctaccattgcatccaagtttggtctggaatatataactgttggttgctttcagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA
              | | | | |  || |    ||  |   ||   | ||   ||  |  |    || ||||||||| ||   |  ||| ||  ||||| || ||  | || ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||||||||| | | | || ||| || 
-------------gtggaacactagaact----atgcatagttattttcagtatttataggtgggatttaactgttg-ttatatatagGTTATGATTGGCGATTACCTGGGCCAACACGAGGAGTTTCCTCTTGCTGTCATGCATGCATATGTTGATTCAATGAAATTTTCAGAAATGAAGTTTCATT

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 19
gttgtgaccttctctagtataatttaatttttgatctaccattgcatccaagtttggtctggaat-atataactgttggttgcttt-cagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA
                ||  | |||   ||||| | || | ||   | ||    |||  | || |  | ||||  ||      ||| |||||||  |||||||| || || ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||| | || |||||||
----------------gtggattttctattttggtataactttagtttcatcaatggaatagatttgtgtaacccttatggattttacagGCTATGATTGGTGATTACTTGGGTCAGCATGAGGAGTTTCCCCTTGCTGTTATGCATGCTTATGTGGATTCCATGAAGTTTTCTGGAATGAAGTTTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaccattgcatccaagtttggtctggaatatataactgttggttgctttcagGCTACAATTGGTGACTATTTAGGTCAACATGAAGAATTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATA
                                atataac  putative branch site (score: 3)
                                             ttgctttc  putative PPT
                             aatatataactgtt  TA-rich tract