1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ccaatccaatgggtatatagtgacatattattattgtcatttgtaaagtatttgtttttttagtaattatggattattgatgatttttcactttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG
species | Glycine max |
transcript | GLYMA12G30540.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193333255|gb|FK298789.1|FK298789
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193508871|gb|FK465467.1|FK465467
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|207838025|gb|GD810359.1|GD810359
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193599772|gb|FK551567.1|FK551567
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: AGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193429943|gb|FK395017.1|FK395017
genomic: AGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|207694182|gb|GD674277.1|GD674277
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193356432|gb|FK320905.1|FK320905
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|193443396|gb|FK409170.1|FK409170
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|208307393|gb|GE107071.1|GE107071
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgaaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
aagtatttgtttttttagtaattatggattattgatgatttttcactttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG
tattgat putative branch site (score: 3)
tttttcacttt putative PPT
tttttttagtaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaatccaatgggtatatagtgacatattattattgtcatttgtaaagtatttgtttttttagtaattatggattattgatgatttttcactttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
ccaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat